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Abstract Intense upward electron beams were measured by the Juno JADE instrument in the northern hemisphere, low‐latitude auroral zone source region. In this study we report on how these electron beams interact with plasma near and within the Jovian hectometric (HOM) emission (1 MHz 5 MHz) source region. Within the source region large upward loss cones are observed in the northern polar region at radial distances of 2Rj, magnetic latitude of . Intense, narrow electron beams ( 3 keV) are then observed, but within one second wave‐particle scattering is observed, filling the loss cone to energies 50 keV. These energies persist for several seconds before fading, leaving an empty loss cone again. The loss cone provides a free‐energy source for HOM emission resulting from the cyclotron maser instability. We use quasilinear analysis to examine the generation of HOM and the dynamics of wave‐particle interaction of the electron beams with HOM, and the generation via Landau interaction of whistler mode emission. The dynamic spectrum of the HOM emission generated by the loss‐cone electrons as well as that of the low‐frequency whistler‐mode waves generated by the up‐going electron beam can be constructed by quasilinear theory, which compare well with observation. The saturated state of the energetic electron velocity distribution function constructed via quasilinear theory also compare reasonably with observation. 

Interchange instability is known to drive fast radial transport of particles in Jupiter's inner magnetosphere. Magnetic flux tubes associated with the interchange instability often coincide with changes in particle distributions and plasma waves, but further investigations are required to understand their detailed characteristics. We analyze representative interchange events observed by Juno, which exhibit intriguing features of particle distributions and plasma waves, including Z‐mode and whistler‐mode waves. These events occurred at an equatorial radial distance of ∼9 Jovian radii on the nightside, with Z‐mode waves observed at mid‐latitude and whistler‐mode waves near the equator. We calculate the linear growth rate of whistler‐mode and Z‐mode waves based on the observed plasma parameters and electron distributions and find that both waves can be locally generated within the interchanged flux tube. Our findings are important for understanding particle transport and generation of plasma waves in the magnetospheres of Jupiter and other planetary systems.